RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Hairpin loop features Number of hairpin loops per molecule: Greater than or equal to 0

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SRP_00274 PSE.SYR. SRP RNA Unknown SRP Database PSE.SYR. 118 SRP_00275 PYR.ABY. SRP RNA Unknown SRP Database PYR.ABY. 297 SRP_00276 PYR.FUR. SRP RNA Unknown SRP Database PYR.FUR. 319 SRP_00277 PYR.HOR. SRP RNA Pyrococcus horikoshii SRP Database PYR.HOR. 319 SRP_00278 PYR.OCC. SRP RNA Unknown SRP Database PYR.OCC. 304 SRP_00279 RAS.SOL. SRP RNA Unknown SRP Database RAS.SOL. 104 SRP_00280 RAT.NOR. SRP RNA Unknown SRP Database RAT.NOR. 298 SRP_00281 RAT.RAT. SRP RNA Unknown SRP Database RAT.RAT. 300 SRP_00282 RHI.ORY. SRP RNA Unknown SRP Database RHI.ORY. 295 SRP_00283 RHO.PAL. SRP RNA Unknown SRP Database RHO.PAL. 105

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)