RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Hairpin loop features Number of hairpin loops per molecule: Greater than or equal to 0

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00111 STRUCTURE OF SL4 RNA FROM THE HIV-1 PACKAGING SIGNAL Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1JTW 16 PDB_00112 DIMER INITIATION SEQUENCE OF HIV-1LAI GENOMIC RNA: NMR SOLUTION STRUCTURE OF THE EXTENDED DUPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1JU1 46 PDB_00113 SOLUTION STRUCTURE OF HELIX III IN XENOPUS OOCYTE 5S RRNA. Other RNA Unknown RCSB Protein Data Bank 1JUR 22 PDB_00114 THE SOLUTION STRUCTURE OF THE MUTANT 5'AUG3' TRILOOP IN THE RNA PROMOTER REGION OF THE BROME MOSAIC Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1JZC 13 PDB_00115 CRYSTAL STRUCTURE OF A BULGED RNA FROM THE SL2 STEM-LOOP OF THE HIV-1 PSI-RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1JZV 34 PDB_00116 STRUCTURAL BASIS FOR THE 3'-TERMINAL GUANOSINE RECOGNITION BY THE GROUP I INTRON GI Intron TETRAHYMENA THERMOPHILA RCSB Protein Data Bank 1K2G 22 PDB_00117 STRUCTURE OF AGAA RNA TETRALOOP, NMR, 20 STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1K4A 14 PDB_00118 STRUCTURE OF AGUU RNA TETRALOOP, NMR, 20 STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1K4B 14 PDB_00119 NMR STRUCTURE OF A RIBOSOMAL RNA HAIRPIN CONTAINING A CONSERVED CUCAA PENTALOOP Other rRNA Unknown RCSB Protein Data Bank 1K5I 23 PDB_00120 SOLUTION STRUCTURE OF CONSERVED AGNN TETRALOOPS: INSIGHTS INTO RNT1P RNA PROCESSING Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1K6G 22

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)