RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Hairpin loop features Number of hairpin loops per molecule: Greater than or equal to 0

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00088 SOLUTION STRUCTURE OF THE VS RIBOZYME SUBSTRATE STEM-LOOP Other Ribozyme Unknown RCSB Protein Data Bank 1HWQ 30 PDB_00089 SOLUTION STRUCTURE OF THE A LOOP OF 23S RIBOSOMAL RNA 23S rRNA Unknown RCSB Protein Data Bank 1I3X 19 PDB_00090 SOLUTION STRUCTURE OF THE A LOOP OF 23S RIBOSOMAL RNA. 23S rRNA Unknown RCSB Protein Data Bank 1I3Y 19 PDB_00091 THE SOLUTION STRUCTURE OF THE MUTANT STEM LOOP C 5'GUA3' TRILOOP OF BROME MOSAIC VIRUS (+) STRAND RN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1I46 13 PDB_00092 THE SOLUTION STRUCTURE OF THE MAJOR FAMILY OF THE MUTANT STEM LOOP C 5'UUA3' TRILOOP OF BROME MOSAIC Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1I4B 13 PDB_00093 THE SOLUTION STRUCTURE OF THE MINOR FAMILY OF THE MUTANT STEM LOOP C 5'UUA3' TRILOOP OF BROME MOSAIC Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1I4C 13 PDB_00095 CRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEX tRNA SACCHAROMYCES CEREVISIAE RCSB Protein Data Bank 1I9V 75 PDB_00096 CRYSTAL STRUCTURE OF BPS-U2 SNRNA DUPLEX snRNA Unknown RCSB Protein Data Bank 1I9X 26 PDB_00097 NMR STRUCTURE OF HCV IRES RNA DOMAIN IIIC IRES Unknown RCSB Protein Data Bank 1IDV 10 PDB_00098 NMR SOLUTION STRUCTURE OF AN IN VITRO SELECTED RNA WHICH IS SEQUENCE SPECIFICALLY RECOGNIZED BY HAMS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1IE1 22

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)