RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Hairpin loop features Number of hairpin loops per molecule: Greater than or equal to 0

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00068 NMR SOLUTION STRUCTURE OF THE ANTICODON OF TRNA(LYS3) WITH T6A MODIFICATION AT POSITION 37 tRNA Unknown RCSB Protein Data Bank 1FEQ 17 PDB_00069 NMR STRUCTURE OF THE 690 LOOP OF 16 S RRNA OF E. COLI 16S rRNA E. COLI RCSB Protein Data Bank 1FHK 14 PDB_00070 CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3) tRNA BOS TAURUS RCSB Protein Data Bank 1FIR 76 PDB_00071 HYPERMODIFIED NUCLEOSIDES IN THE ANTICODON OF TRNALYS STABILIZE A CANONICAL U-TURN STRUCTURE tRNA Unknown RCSB Protein Data Bank 1FL8 17 PDB_00072 PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA Viral & Phage BACTERIOPHAGE PHI29 RCSB Protein Data Bank 1FOQ 545 PDB_00073 NMR VALIDATED MODEL OF DOMAIN IIID OF HEPATITIS C VIRUS INTERNAL RIBOSOME ENTRY SITE IRES HEPATITIS C VIRUS RCSB Protein Data Bank 1FQZ 27 PDB_00074 CRYSTAL STRUCTURE OF A 14BP RNA OLIGONUCLEOTIDE CONTAINING DOUBLE UU BULGES: A NOVEL INTRAMOLECULAR Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1FUF 28 PDB_00075 EUKARYOTIC DECODING REGION A-SITE RNA Other rRNA TETRAHYMENA THERMOPHILA RCSB Protein Data Bank 1FYO 27 PDB_00076 EUKARYOTIC DECODING REGION A-SITE RNA-PAROMOMYCIN COMPLEX Other rRNA TETRAHYMENA THERMOPHILA RCSB Protein Data Bank 1FYP 27 PDB_00077 STRUCTURE OF RNA DUPLEXES (CIGCGICG)2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1G3A 12

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)