RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Hairpin loop features Number of hairpin loops per molecule: Greater than or equal to 0

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00048 NMR ANALYSIS OF HELIX I FROM THE 5S RNA OF ESCHERICHIA COLI 5S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 1ELH 25 PDB_00049 SOLUTION STRUCTURE OF A 22-NUCLEOTIDE HAIRPIN SIMILAR TO THE P5ABC REGION OF GROUP I RIBOZYME Other Ribozyme Unknown RCSB Protein Data Bank 1EOR 22 PDB_00050 THE SOLUTION STRUCTURE OF THE STEM LOOP C 5'AUA3' TRILOOP OF BROME MOSAIC VIRUS (+) STRAND RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ESH 13 PDB_00051 NMR STRUCTURE OF STEM LOOP SL2 OF THE HIV-1 PSI RNA PACKAGING SIGNAL REVEALS A NOVEL A-U-A BASE-TRIP Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ESY 19 PDB_00052 CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTION tRNA SACCHAROMYCES RCSB Protein Data Bank 1EVV 76 PDB_00053 CRYSTAL STRUCTURE OF A BIOTIN-BINDING RNA PSEUDOKNOT Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1F27 30 PDB_00054 THE G7(SYN)-G4(ANTI) STRUCTURE OF R(GCAGGCGUGC)2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1F5G 20 PDB_00055 THE G7(SYN)-G4(ANTI) STRUCTURE OF R(GCAGGCGUGC)2 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1F5H 20 PDB_00056 SOLUTION STRUCTURE OF THE KISSING DIMER OF H3 GACG STEM- LOOP IN THE 5'-END DIMERIZATION SIGNAL OF M Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1F5U 36 PDB_00057 SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE RNase P RNA Unknown RCSB Protein Data Bank 1F6X 27

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)