RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Hairpin loop features Number of hairpin loops per molecule: Greater than or equal to 0

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_01342 d.16.e.Undatella.sp 16S rRNA Unknown Gutell Lab CRW Site d.16.e.Undatella.sp 1801 CRW_01343 d.16.e.V.acridophagus 16S rRNA Unknown Gutell Lab CRW Site d.16.e.V.acridophagus 1399 CRW_01344 d.16.e.V.corneae 16S rRNA Unknown Gutell Lab CRW Site d.16.e.V.corneae 1259 CRW_01345 d.16.e.V.culicis 16S rRNA Unknown Gutell Lab CRW Site d.16.e.V.culicis 1364 CRW_01346 d.16.e.V.imperfecta 16S rRNA Unknown Gutell Lab CRW Site d.16.e.V.imperfecta 1231 CRW_01348 d.16.e.Vairimorpha.sp.C21 16S rRNA Unknown Gutell Lab CRW Site d.16.e.Vairimorpha.sp.C21 1248 CRW_01349 d.16.e.W.palustris 16S rRNA Unknown Gutell Lab CRW Site d.16.e.W.palustris 1402 CRW_01456 d.233.c.S.oleracea 23S rRNA Spinacia oleracea Gutell Lab CRW Site d.233.c.S.oleracea 2913 CRW_01482 d.5.a.D.mobilis 5S rRNA Unknown Gutell Lab CRW Site d.5.a.D.mobilis 133 CRW_01484 d.5.a.H.mediterranei.1 5S rRNA Unknown Gutell Lab CRW Site d.5.a.H.mediterranei.1 123

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)