RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Hairpin loop features Number of hairpin loops per molecule: Greater than or equal to 0

Search results: 4666 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00717 a.I1.m.S.luteus.B4.LSU.1923 GI Intron Unknown Gutell Lab CRW Site a.I1.m.S.luteus.B4.LSU.1923 555 CRW_00718 a.I1.m.S.luteus.B4.LSU.2500 GI Intron Unknown Gutell Lab CRW Site a.I1.m.S.luteus.B4.LSU.2500 617 CRW_00719 a.I1.m.S.luteus.C2.LSU.1685 GI Intron Unknown Gutell Lab CRW Site a.I1.m.S.luteus.C2.LSU.1685 679 CRW_00720 a.I1.m.S.luteus.C2.LSU.1949 GI Intron Unknown Gutell Lab CRW Site a.I1.m.S.luteus.C2.LSU.1949 646 CRW_00721 a.I1.m.S.pombe.B1.OX1 GI Intron Unknown Gutell Lab CRW Site a.I1.m.S.pombe.B1.OX1 343 CRW_00722 a.I1.m.S.sclerotiorum.C2.SSU.570 GI Intron Unknown Gutell Lab CRW Site a.I1.m.S.sclerotiorum.C2.SSU.570 1399 CRW_00723 a.I1.m.T.papilionaceus.B2.LSU.1939 GI Intron Unknown Gutell Lab CRW Site a.I1.m.T.papilionaceus.B2.LSU.1939 1780 CRW_00724 a.I2.b.C.sp.B.TBD.i5 GII Intron Unknown Gutell Lab CRW Site a.I2.b.C.sp.B.TBD.i5 2543 CRW_00725 a.I2.b.E.coli.A.TBD.i1 GII Intron Escherichia coli Gutell Lab CRW Site a.I2.b.E.coli.A.TBD.i1 1979 CRW_00726 a.I2.b.L.lactis.A.LtrB.i1 GII Intron Unknown Gutell Lab CRW Site a.I2.b.L.lactis.A.LtrB.i1 2600

Analyse the 4666 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 4666 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 4666 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)