RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Transfer Messenger RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 726 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00667 uncu.bact._TRW-220137-1_1-372 tmRNA Unknown tmRNA Database uncu.bact._TRW-220137-1_1-372 372 TMR_00668 uncu.bact._TRW-220137-2_1-373 tmRNA Unknown tmRNA Database uncu.bact._TRW-220137-2_1-373 373 TMR_00669 uncu.bact._TRW-220137-3_1-372 tmRNA Unknown tmRNA Database uncu.bact._TRW-220137-3_1-372 372 TMR_00670 uncu.bact._TRW-220137-4_1-359 tmRNA Unknown tmRNA Database uncu.bact._TRW-220137-4_1-359 359 TMR_00671 uncu.bact._TRW-220137-5_1-369 tmRNA Unknown tmRNA Database uncu.bact._TRW-220137-5_1-369 369 TMR_00672 uncu.bact._TRW-239992-1_1-368 tmRNA Unknown tmRNA Database uncu.bact._TRW-239992-1_1-368 368 TMR_00673 uncu.bact._TRW-239992-2_1-356 tmRNA Unknown tmRNA Database uncu.bact._TRW-239992-2_1-356 356 TMR_00674 uncu.bact._TRW-267890_1-356 tmRNA Unknown tmRNA Database uncu.bact._TRW-267890_1-356 356 TMR_00675 uncu.bact._TRW-270_1-344 tmRNA Unknown tmRNA Database uncu.bact._TRW-270_1-344 344 TMR_00676 uncu.bact._TRW-300695-1_1-384 tmRNA Unknown tmRNA Database uncu.bact._TRW-300695-1_1-384 384

Analyse the 726 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 726 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 726 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)