RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Ribonuclease P RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 470 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00431 RNase P RNA, Thermoplasma volcanum RNase P RNA Unknown RNase P Database Thermoplasma volcanum 305 ASE_00432 RNase P RNA, uncharacterized N2 fixer TP1 RNase P RNA Unknown RNase P Database uncharacterized N2 fixer TP1 294 ASE_00433 RNase P RNA, Uta stansburiana RNase P RNA Unknown RNase P Database Uta stansburiana 319 ASE_00434 RNase P RNA, Ureaplasma urealyticum RNase P RNA Unknown RNase P Database Ureaplasma urealyticum 370 ASE_00435 RNase P RNA, uncharacterized N2 fixer UK2 RNase P RNA Unknown RNase P Database uncharacterized N2 fixer UK2 294 ASE_00436 RNase P RNA, uncharacterized N2 fixer UK5 RNase P RNA Unknown RNase P Database uncharacterized N2 fixer UK5 294 ASE_00437 RNase P RNA, Vibrio cholerae, strain N16961 RNase P RNA Unknown RNase P Database Vibrio cholerae, strain N16961 399 ASE_00438 RNase P RNA, Verrocomicribium spinosum RNase P RNA Unknown RNase P Database Verrocomicribium spinosum 364 ASE_00439 RNase P RNA, volunteer B11 RNase P RNA Unknown RNase P Database volunteer B11 237 ASE_00440 RNase P RNA, volunteer Hge2 RNase P RNA Unknown RNase P Database volunteer Hge2 311

Analyse the 470 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 470 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 470 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)