RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: 16S Ribosomal RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 723 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_01344 d.16.e.V.corneae 16S rRNA Unknown Gutell Lab CRW Site d.16.e.V.corneae 1259 CRW_01345 d.16.e.V.culicis 16S rRNA Unknown Gutell Lab CRW Site d.16.e.V.culicis 1364 CRW_01346 d.16.e.V.imperfecta 16S rRNA Unknown Gutell Lab CRW Site d.16.e.V.imperfecta 1231 CRW_01348 d.16.e.Vairimorpha.sp.C21 16S rRNA Unknown Gutell Lab CRW Site d.16.e.Vairimorpha.sp.C21 1248 CRW_01349 d.16.e.W.palustris 16S rRNA Unknown Gutell Lab CRW Site d.16.e.W.palustris 1402 PDB_00069 NMR STRUCTURE OF THE 690 LOOP OF 16 S RRNA OF E. COLI 16S rRNA E. COLI RCSB Protein Data Bank 1FHK 14 PDB_00227 HELIX 45 (16S RRNA) FROM B. STEAROTHERMOPHILUS, NMR, MINIMIZED AVERAGE STRUCTURE 16S rRNA Unknown RCSB Protein Data Bank 1WTS 14 PDB_00228 HELIX 45 (16S RRNA) FROM B. STEAROTHERMOPHILUS, NMR, 11 STRUCTURES 16S rRNA Unknown RCSB Protein Data Bank 1WTT 14 PDB_00408 STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOM 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1FJG 1513 PDB_00409 STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1FKA 1174

Analyse the 723 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 723 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 723 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)