RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00464 d.16.m.Z.californianus 16S rRNA Unknown Gutell Lab CRW Site d.16.m.Z.californianus 962 CRW_00465 d.16.m.Z.mays 16S rRNA Unknown Gutell Lab CRW Site d.16.m.Z.mays 1962 CRW_00466 d.16.y.C.paradoxa 16S rRNA Unknown Gutell Lab CRW Site d.16.y.C.paradoxa 1495 CRW_00467 d.233.a.H.marismortui.1 23S rRNA Haloarcula marismortui Gutell Lab CRW Site d.233.a.H.marismortui.1 2925 CRW_00468 d.233.a.H.marismortui.2 23S rRNA Unknown Gutell Lab CRW Site d.233.a.H.marismortui.2 2930 CRW_00469 d.233.a.H.marismortui.3 23S rRNA Unknown Gutell Lab CRW Site d.233.a.H.marismortui.3 2930 CRW_00471 d.233.b.A.calcoaceticus 23S rRNA Unknown Gutell Lab CRW Site d.233.b.A.calcoaceticus 2903 CRW_00472 d.233.b.A.hydrophila 23S rRNA Unknown Gutell Lab CRW Site d.233.b.A.hydrophila 2895 CRW_00473 d.233.b.B.anthracis 23S rRNA Unknown Gutell Lab CRW Site d.233.b.B.anthracis 2920 CRW_00474 d.233.b.B.bacilliformis 23S rRNA Unknown Gutell Lab CRW Site d.233.b.B.bacilliformis 2821

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)