RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00412 d.16.e.U.pisces 16S rRNA Unknown Gutell Lab CRW Site d.16.e.U.pisces 1772 CRW_00413 d.16.e.V.necatrix 16S rRNA Unknown Gutell Lab CRW Site d.16.e.V.necatrix 1244 CRW_00414 d.16.e.X.borealis 16S rRNA Unknown Gutell Lab CRW Site d.16.e.X.borealis 1826 CRW_00415 d.16.e.X.laevis 16S rRNA Xenopus laevis Gutell Lab CRW Site d.16.e.X.laevis 1826 CRW_00416 d.16.e.Z.mays 16S rRNA Unknown Gutell Lab CRW Site d.16.e.Z.mays 1805 CRW_00417 d.16.m.A.americana 16S rRNA Unknown Gutell Lab CRW Site d.16.m.A.americana 958 CRW_00418 d.16.m.A.cahirinus 16S rRNA Unknown Gutell Lab CRW Site d.16.m.A.cahirinus 940 CRW_00419 d.16.m.A.fulgens 16S rRNA Unknown Gutell Lab CRW Site d.16.m.A.fulgens 964 CRW_00420 d.16.m.Ateles.sp 16S rRNA Unknown Gutell Lab CRW Site d.16.m.Ateles.sp 955 CRW_00421 d.16.m.B.brevicauda 16S rRNA Unknown Gutell Lab CRW Site d.16.m.B.brevicauda 963

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)