RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00402 d.16.e.T.foetus 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.foetus 1572 CRW_00403 d.16.e.T.gondii 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.gondii 1793 CRW_00404 d.16.e.T.hispida 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.hispida 1867 CRW_00405 d.16.e.T.solenopsae 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.solenopsae 1410 CRW_00406 d.16.e.T.violacea.1 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.violacea.1 1916 CRW_00407 d.16.e.T.violacea.2 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.violacea.2 1920 CRW_00408 d.16.e.T.violacea.4 16S rRNA Unknown Gutell Lab CRW Site d.16.e.T.violacea.4 1868 CRW_00409 d.16.e.U.gallina 16S rRNA Unknown Gutell Lab CRW Site d.16.e.U.gallina 1775 CRW_00410 d.16.e.U.grandis 16S rRNA Unknown Gutell Lab CRW Site d.16.e.U.grandis 1768 CRW_00411 d.16.e.U.maydis 16S rRNA Unknown Gutell Lab CRW Site d.16.e.U.maydis 1798

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)