RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00271 d.16.c.C.fragile 16S rRNA Unknown Gutell Lab CRW Site d.16.c.C.fragile 1499 CRW_00272 d.16.c.C.paradoxa 16S rRNA Unknown Gutell Lab CRW Site d.16.c.C.paradoxa 1506 CRW_00273 d.16.c.C.reinhardtii 16S rRNA Unknown Gutell Lab CRW Site d.16.c.C.reinhardtii 1474 CRW_00274 d.16.c.C.sertularioides 16S rRNA Unknown Gutell Lab CRW Site d.16.c.C.sertularioides 1501 CRW_00275 d.16.c.C.vulgaris 16S rRNA Unknown Gutell Lab CRW Site d.16.c.C.vulgaris 1494 CRW_00276 d.16.c.Cryptomonas.sp 16S rRNA Unknown Gutell Lab CRW Site d.16.c.Cryptomonas.sp 1493 CRW_00277 d.16.c.E.gracilis 16S rRNA Unknown Gutell Lab CRW Site d.16.c.E.gracilis 1491 CRW_00278 d.16.c.H.africana 16S rRNA Unknown Gutell Lab CRW Site d.16.c.H.africana 1504 CRW_00279 d.16.c.H.akashiwo 16S rRNA Unknown Gutell Lab CRW Site d.16.c.H.akashiwo 1537 CRW_00280 d.16.c.M.polymorpha 16S rRNA Unknown Gutell Lab CRW Site d.16.c.M.polymorpha 1496

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)