RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00251 d.16.b.T.roseum 16S rRNA Unknown Gutell Lab CRW Site d.16.b.T.roseum 1528 CRW_00252 d.16.b.T.thermophilus.1 16S rRNA Thermus thermophilus Gutell Lab CRW Site d.16.b.T.thermophilus.1 1518 CRW_00253 d.16.b.T.thermophilus.2 16S rRNA Thermus thermophilus Gutell Lab CRW Site d.16.b.T.thermophilus.2 1522 CRW_00254 d.16.b.u.proteobacterium 16S rRNA Unknown Gutell Lab CRW Site d.16.b.u.proteobacterium 1530 CRW_00255 d.16.b.U.urealyticum 16S rRNA Unknown Gutell Lab CRW Site d.16.b.U.urealyticum 1517 CRW_00256 d.16.b.U.urealyticum.GEN 16S rRNA Unknown Gutell Lab CRW Site d.16.b.U.urealyticum.GEN 1545 CRW_00257 d.16.b.V.cholerae 16S rRNA Unknown Gutell Lab CRW Site d.16.b.V.cholerae 1544 CRW_00258 d.16.b.V.cholerae.GEN 16S rRNA Unknown Gutell Lab CRW Site d.16.b.V.cholerae.GEN 1543 CRW_00259 d.16.b.V.cholerae2 16S rRNA Unknown Gutell Lab CRW Site d.16.b.V.cholerae2 1542 CRW_00260 d.16.b.V.cholerae4 16S rRNA Unknown Gutell Lab CRW Site d.16.b.V.cholerae4 1542

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)