RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00241 d.16.b.S.thermovulgaris.1 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.thermovulgaris.1 1531 CRW_00242 d.16.b.S.thermovulgaris.2 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.thermovulgaris.2 1531 CRW_00243 d.16.b.S.typhimurium 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.typhimurium 1540 CRW_00244 d.16.b.Streptomyces.sp 16S rRNA Unknown Gutell Lab CRW Site d.16.b.Streptomyces.sp 1530 CRW_00245 d.16.b.Synechococcus.sp 16S rRNA Unknown Gutell Lab CRW Site d.16.b.Synechococcus.sp 1488 CRW_00246 d.16.b.Synechocystis.PCC6803.GEN 16S rRNA Unknown Gutell Lab CRW Site d.16.b.Synechocystis.PCC6803.GEN 1489 CRW_00247 d.16.b.T.aquaticus 16S rRNA Thermus aquaticus Gutell Lab CRW Site d.16.b.T.aquaticus 1519 CRW_00248 d.16.b.T.maritima 16S rRNA Thermotoga maritima Gutell Lab CRW Site d.16.b.T.maritima 1562 CRW_00249 d.16.b.T.maritima.GEN 16S rRNA Thermotoga maritima Gutell Lab CRW Site d.16.b.T.maritima.GEN 1559 CRW_00250 d.16.b.T.pallidum.A 16S rRNA Unknown Gutell Lab CRW Site d.16.b.T.pallidum.A 1549

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)