RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00221 d.16.b.S.moniliformis 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.moniliformis 1521 CRW_00222 d.16.b.S.neyagawaensis 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.neyagawaensis 1531 CRW_00223 d.16.b.S.nodosus 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.nodosus 1528 CRW_00224 d.16.b.S.odorifer 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.odorifer 1527 CRW_00225 d.16.b.S.ornatus 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.ornatus 1525 CRW_00226 d.16.b.S.pneumoniae 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.pneumoniae 1550 CRW_00227 d.16.b.S.pseudogriseolus 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.pseudogriseolus 1524 CRW_00228 d.16.b.S.putrefaciens 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.putrefaciens 1543 CRW_00229 d.16.b.S.pyogenes 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.pyogenes 1549 CRW_00230 d.16.b.S.pyogenes.GEN 16S rRNA Unknown Gutell Lab CRW Site d.16.b.S.pyogenes.GEN 1549

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)