RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00090 d.16.b.C.pneumoniae.AR39 16S rRNA Unknown Gutell Lab CRW Site d.16.b.C.pneumoniae.AR39 1555 CRW_00091 d.16.b.C.pneumoniae 16S rRNA Unknown Gutell Lab CRW Site d.16.b.C.pneumoniae 1554 CRW_00092 d.16.b.C.pneumoniae.CWL029 16S rRNA Unknown Gutell Lab CRW Site d.16.b.C.pneumoniae.CWL029 1555 CRW_00093 d.16.b.C.pneumoniae.J138 16S rRNA Unknown Gutell Lab CRW Site d.16.b.C.pneumoniae.J138 1555 CRW_00094 d.16.b.C.psittaci 16S rRNA Unknown Gutell Lab CRW Site d.16.b.C.psittaci 1552 CRW_00095 d.16.b.C.sputorum 16S rRNA Unknown Gutell Lab CRW Site d.16.b.C.sputorum 1744 CRW_00096 d.16.b.C.testosteroni 16S rRNA Unknown Gutell Lab CRW Site d.16.b.C.testosteroni 1536 CRW_00097 d.16.b.C.tetani 16S rRNA Unknown Gutell Lab CRW Site d.16.b.C.tetani 1517 CRW_00098 d.16.b.C.trachomatis.GEN 16S rRNA Unknown Gutell Lab CRW Site d.16.b.C.trachomatis.GEN 1554 CRW_00099 d.16.b.C.trachomatis.L2 16S rRNA Unknown Gutell Lab CRW Site d.16.b.C.trachomatis.L2 1554

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)