RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00068 d.16.b.B.japonicum 16S rRNA Unknown Gutell Lab CRW Site d.16.b.B.japonicum 1490 CRW_00069 d.16.b.B.mallei 16S rRNA Unknown Gutell Lab CRW Site d.16.b.B.mallei 1533 CRW_00070 d.16.b.B.melitensis 16S rRNA Unknown Gutell Lab CRW Site d.16.b.B.melitensis 1489 CRW_00071 d.16.b.B.parapertussis 16S rRNA Unknown Gutell Lab CRW Site d.16.b.B.parapertussis 1531 CRW_00072 d.16.b.B.pertussis 16S rRNA Unknown Gutell Lab CRW Site d.16.b.B.pertussis 1531 CRW_00073 d.16.b.B.quintana 16S rRNA Unknown Gutell Lab CRW Site d.16.b.B.quintana 1493 CRW_00074 d.16.b.B.subtilis 16S rRNA Bacillus subtilis Gutell Lab CRW Site d.16.b.B.subtilis 1552 CRW_00075 d.16.b.B.subtilis.GEN 16S rRNA Unknown Gutell Lab CRW Site d.16.b.B.subtilis.GEN 1553 CRW_00077 d.16.b.Beggiatoa.sp 16S rRNA Unknown Gutell Lab CRW Site d.16.b.Beggiatoa.sp 1522 CRW_00078 d.16.b.Burkholderia.sp 16S rRNA Unknown Gutell Lab CRW Site d.16.b.Burkholderia.sp 1535

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)