RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00446 RNase P RNA, uncharacterized N2 fixer WC1 RNase P RNA Unknown RNase P Database uncharacterized N2 fixer WC1 294 ASE_00447 RNase P RNA, Wolbachia sp RNase P RNA Unknown RNase P Database Wolbachia sp 348 ASE_00448 RNase P RNA, Xyelella fastidiosa RNase P RNA Unknown RNase P Database Xyelella fastidiosa 359 ASE_00449 RNase P RNA, Xenopus laevis RNase P RNA Xenopus laevis RNase P Database Xenopus laevis 319 ASE_00450 RNase P RNA, Xenopus laevis RNase P RNA Xenopus laevis RNase P Database Xenopus laevis 318 ASE_00451 RNase P RNA, Yersinia pestis, strain CO-92 Orientalis RNase P RNA Unknown RNase P Database Yersinia pestis, strain CO-92 Orientalis 377 CRW_00001 a.I2.m.S.cerevisiae.A.OX1.i1 GII Intron Saccharomyces cerevisiae Gutell Lab CRW Site a.I2.m.S.cerevisiae.A.OX1.i1 2520 CRW_00002 a.I2.m.S.cerevisiae.B.OX1.i5 GII Intron Saccharomyces cerevisiae Gutell Lab CRW Site a.I2.m.S.cerevisiae.B.OX1.i5 905 CRW_00004 b.I1.e.A.griffini.1.C1.SSU.516 GI Intron Unknown Gutell Lab CRW Site b.I1.e.A.griffini.1.C1.SSU.516 556 CRW_00005 b.I1.e.A.griffini.2.C1.SSU.516 GI Intron Unknown Gutell Lab CRW Site b.I1.e.A.griffini.2.C1.SSU.516 526

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)