RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00424 RNase P RNA, Thermotoga maritima, strain MSB8 RNase P RNA Thermotoga maritima RNase P Database Thermotoga maritima, strain MSB8 338 ASE_00425 RNase P RNA, Thermotoga neapolitana, strain 5068 RNase P RNA Unknown RNase P Database Thermotoga neapolitana, strain 5068 338 ASE_00426 RNase P RNA, Thermomicrobium roseum, strain ATCC 27502 RNase P RNA Unknown RNase P Database Thermomicrobium roseum, strain ATCC 27502 350 ASE_00428 RNase P RNA, Thermus thermophilus, strain HB8 RNase P RNA Thermus thermophilus RNase P Database Thermus thermophilus, strain HB8 392 ASE_00429 RNase P RNA, Thiobacillus thioparus, strain ATCC 8158 RNase P RNA Unknown RNase P Database Thiobacillus thioparus, strain ATCC 8158 238 ASE_00430 RNase P RNA, Terrabacter tumescens, strain KCTC 9133 RNase P RNA Unknown RNase P Database Terrabacter tumescens, strain KCTC 9133 307 ASE_00431 RNase P RNA, Thermoplasma volcanum RNase P RNA Unknown RNase P Database Thermoplasma volcanum 305 ASE_00432 RNase P RNA, uncharacterized N2 fixer TP1 RNase P RNA Unknown RNase P Database uncharacterized N2 fixer TP1 294 ASE_00433 RNase P RNA, Uta stansburiana RNase P RNA Unknown RNase P Database Uta stansburiana 319 ASE_00434 RNase P RNA, Ureaplasma urealyticum RNase P RNA Unknown RNase P Database Ureaplasma urealyticum 370

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)