RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00700 Vibr.chol._TRW-345075_1-366 tmRNA Unknown tmRNA Database Vibr.chol._TRW-345075_1-366 366 TMR_00701 Vibr.chol._U39068_1-367 tmRNA Unknown tmRNA Database Vibr.chol._U39068_1-367 367 TMR_00702 Vibr.fisc._CP000020_1-367 tmRNA Unknown tmRNA Database Vibr.fisc._CP000020_1-367 367 TMR_00703 Vibr.para._BA000031_1-368 tmRNA Unknown tmRNA Database Vibr.para._BA000031_1-368 368 TMR_00704 Vibr.spec._TRW-345075_1-368 tmRNA Unknown tmRNA Database Vibr.spec._TRW-345075_1-368 368 TMR_00705 Vibr.vuln._AE016795_1-367 tmRNA Unknown tmRNA Database Vibr.vuln._AE016795_1-367 367 TMR_00706 Wigg.glos._BA000021_1-365 tmRNA Unknown tmRNA Database Wigg.glos._BA000021_1-365 365 TMR_00707 Wolb.endo._AE017196_1-308 tmRNA Unknown tmRNA Database Wolb.endo._AE017196_1-308 308 TMR_00708 Wolb.endo._AE017321_1-305 tmRNA Unknown tmRNA Database Wolb.endo._AE017321_1-305 305 TMR_00709 Wolb.endo._TRW-263437_1-307 tmRNA Unknown tmRNA Database Wolb.endo._TRW-263437_1-307 307

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)