RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00690 uncu.bact._TRW-80840-5_1-366 tmRNA Unknown tmRNA Database uncu.bact._TRW-80840-5_1-366 366 TMR_00691 uncu.bact._TRW-80840-6_1-332 tmRNA Unknown tmRNA Database uncu.bact._TRW-80840-6_1-332 332 TMR_00692 uncu.bact._TRW-815_1-353 tmRNA Unknown tmRNA Database uncu.bact._TRW-815_1-353 333 TMR_00693 uncu.bact._TRW-91347-1_1-363 tmRNA Unknown tmRNA Database uncu.bact._TRW-91347-1_1-363 362 TMR_00694 uncu.bact._TRW-91347-2_1-372 tmRNA Unknown tmRNA Database uncu.bact._TRW-91347-2_1-372 372 TMR_00695 uncu.mari._TRW-363180_1-347 tmRNA Unknown tmRNA Database uncu.mari._TRW-363180_1-347 347 TMR_00696 Urea.parv._AE002154_1-413 tmRNA Unknown tmRNA Database Urea.parv._AE002154_1-413 413 TMR_00697 Vari.para._TRW-34073_1-386 tmRNA Unknown tmRNA Database Vari.para._TRW-34073_1-386 386 TMR_00698 Verr.spin._TRW-240016_1-356 tmRNA Unknown tmRNA Database Verr.spin._TRW-240016_1-356 356 TMR_00699 Vibr.chol._AE004170_1-367 tmRNA Unknown tmRNA Database Vibr.chol._AE004170_1-367 367

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)