RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00620 Trem.prin._TRW-189385-3_1-266 tmRNA Unknown tmRNA Database Trem.prin._TRW-189385-3_1-266 266 TMR_00621 Trem.prin._TRW-189385-4_1-265 tmRNA Unknown tmRNA Database Trem.prin._TRW-189385-4_1-265 265 TMR_00622 Trem.prin._TRW-189385-5_1-265 tmRNA Unknown tmRNA Database Trem.prin._TRW-189385-5_1-265 265 TMR_00623 Trep.dent._AE017226_1-351 tmRNA Unknown tmRNA Database Trep.dent._AE017226_1-351 351 TMR_00624 Trep.pall._TRW-243276_1-354 tmRNA Unknown tmRNA Database Trep.pall._TRW-243276_1-354 354 TMR_00625 Tric.eryt._CP000393_1-398 tmRNA Unknown tmRNA Database Tric.eryt._CP000393_1-398 398 TMR_00626 Trop.whip._BX251411_1-369 tmRNA Unknown tmRNA Database Trop.whip._BX251411_1-369 369 TMR_00627 uncu.bact._AF389942_1-364 tmRNA Unknown tmRNA Database uncu.bact._AF389942_1-364 364 TMR_00628 uncu.bact._AF389943_1-363 tmRNA Unknown tmRNA Database uncu.bact._AF389943_1-363 363 TMR_00629 uncu.bact._AF389945_1-363 tmRNA Unknown tmRNA Database uncu.bact._AF389945_1-363 363

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)