RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00560 Stre.agal._AE014233_1-350 tmRNA Unknown tmRNA Database Stre.agal._AE014233_1-350 350 TMR_00561 Stre.agal._TRW-1311_1-350 tmRNA Unknown tmRNA Database Stre.agal._TRW-1311_1-350 350 TMR_00562 Stre.aure._AY616521_1-382 tmRNA Unknown tmRNA Database Stre.aure._AY616521_1-382 382 TMR_00563 Stre.aver._BA000030_1-389 tmRNA Unknown tmRNA Database Stre.aver._BA000030_1-389 389 TMR_00564 Stre.coel._TRW-100226_1-399 tmRNA Unknown tmRNA Database Stre.coel._TRW-100226_1-399 399 TMR_00565 Stre.coll._AY485228_1-386 tmRNA Unknown tmRNA Database Stre.coll._AY485228_1-386 386 TMR_00566 Stre.equi._TRW-1336_1-349 tmRNA Unknown tmRNA Database Stre.equi._TRW-1336_1-349 349 TMR_00567 Stre.equi._TRW-40041_1-349 tmRNA Unknown tmRNA Database Stre.equi._TRW-40041_1-349 349 TMR_00568 Stre.gord._TRW-29390_1-349 tmRNA Unknown tmRNA Database Stre.gord._TRW-29390_1-349 349 TMR_00569 Stre.livi._AJ867055_1-399 tmRNA Unknown tmRNA Database Stre.livi._AJ867055_1-399 399

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)