RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00540 Soda.glos._AP008232_1-384 tmRNA Unknown tmRNA Database Soda.glos._AP008232_1-384 384 TMR_00541 Soli.usit._CP000473_1-352 tmRNA Unknown tmRNA Database Soli.usit._CP000473_1-352 352 TMR_00542 Sphi.alas._CP000356_1-305 tmRNA Unknown tmRNA Database Sphi.alas._CP000356_1-305 305 TMR_00543 Sphi.elod._TRW-179878_1-300 tmRNA Unknown tmRNA Database Sphi.elod._TRW-179878_1-300 300 TMR_00544 Spir.citr._AM285321_1-424 tmRNA Unknown tmRNA Database Spir.citr._AM285321_1-424 424 TMR_00545 Spir.kunk._TRW-273035_1-424 tmRNA Unknown tmRNA Database Spir.kunk._TRW-273035_1-424 424 TMR_00546 Stap.aure._AC074317_1-359 tmRNA Unknown tmRNA Database Stap.aure._AC074317_1-359 359 TMR_00547 Stap.aure._BA000017_1-362 tmRNA Unknown tmRNA Database Stap.aure._BA000017_1-362 362 TMR_00548 Stap.aure._BA000018_1-362 tmRNA Unknown tmRNA Database Stap.aure._BA000018_1-362 362 TMR_00549 Stap.aure._BA000033_1-362 tmRNA Unknown tmRNA Database Stap.aure._BA000033_1-362 362

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)