RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00489 Rhod.sali._TRW-52970_1-352 tmRNA Unknown tmRNA Database Rhod.sali._TRW-52970_1-352 352 TMR_00490 Rhod.spha._TRW-272943_1-318 tmRNA Unknown tmRNA Database Rhod.spha._TRW-272943_1-318 318 TMR_00491 Rick.akar._TRW-293614_1-288 tmRNA Unknown tmRNA Database Rick.akar._TRW-293614_1-288 288 TMR_00492 Rick.cono._AE008661_1-292 tmRNA Unknown tmRNA Database Rick.cono._AE008661_1-292 292 TMR_00493 Rick.feli._CP000053_1-287 tmRNA Unknown tmRNA Database Rick.feli._CP000053_1-287 287 TMR_00494 Rick.prow._AJ235273_1-291 tmRNA Unknown tmRNA Database Rick.prow._AJ235273_1-291 291 TMR_00495 Rick.rick._TRW-783_1-292 tmRNA Unknown tmRNA Database Rick.rick._TRW-783_1-292 292 TMR_00496 Rick.sibi._TRW-272951_1-292 tmRNA Unknown tmRNA Database Rick.sibi._TRW-272951_1-292 292 TMR_00497 Rick.typh._AE017197_1-294 tmRNA Unknown tmRNA Database Rick.typh._AE017197_1-294 294 TMR_00498 Rubr.gela._TRW-279263_1-372 tmRNA Unknown tmRNA Database Rubr.gela._TRW-279263_1-372 372

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)