RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00424 Phot.asym._TRW-291112_1-364 tmRNA Unknown tmRNA Database Phot.asym._TRW-291112_1-364 364 TMR_00425 Phot.lumi._BX571870_1-364 tmRNA Unknown tmRNA Database Phot.lumi._BX571870_1-364 364 TMR_00426 Phot.phos._AY040837_1-370 tmRNA Unknown tmRNA Database Phot.phos._AY040837_1-370 370 TMR_00427 Phot.prof._CR378665_1-368 tmRNA Unknown tmRNA Database Phot.prof._CR378665_1-368 368 TMR_00428 Plec.bory._AY082652_1-391 tmRNA Unknown tmRNA Database Plec.bory._AY082652_1-391 391 TMR_00429 Pola.spec._CP000316_1-387 tmRNA Unknown tmRNA Database Pola.spec._CP000316_1-387 387 TMR_00430 Porp.ging._TRW-242619_1-407 tmRNA Unknown tmRNA Database Porp.ging._TRW-242619_1-407 407 TMR_00431 Porp.purp._TRW-2787_1-323 tmRNA Unknown tmRNA Database Porp.purp._TRW-2787_1-323 323 TMR_00432 Prev.inte._TRW-246198_1-400 tmRNA Unknown tmRNA Database Prev.inte._TRW-246198_1-400 400 TMR_00433 Prev.rumi._TRW-264731_1-401 tmRNA Unknown tmRNA Database Prev.rumi._TRW-264731_1-401 401

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)