RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00413 Osci.sanc._AY911518_1-395 tmRNA Unknown tmRNA Database Osci.sanc._AY911518_1-395 395 TMR_00414 Osci.spec._AY082651_1-391 tmRNA Unknown tmRNA Database Osci.spec._AY082651_1-391 391 TMR_00415 Paen.larv._TRW-1464_1-367 tmRNA Unknown tmRNA Database Paen.larv._TRW-1464_1-367 367 TMR_00416 Paen.mace._TRW-44252_1-359 tmRNA Unknown tmRNA Database Paen.mace._TRW-44252_1-359 359 TMR_00417 Pant.stew._TRW-66269_1-363 tmRNA Unknown tmRNA Database Pant.stew._TRW-66269_1-363 363 TMR_00418 Para.deni._TRW-318586_1-318 tmRNA Unknown tmRNA Database Para.deni._TRW-318586_1-318 318 TMR_00419 Para.symb._BX908798_1-405 tmRNA Unknown tmRNA Database Para.symb._BX908798_1-405 405 TMR_00420 Past.mult._AE006115_1-367 tmRNA Unknown tmRNA Database Past.mult._AE006115_1-367 367 TMR_00422 Pedi.pent._CP000422_1-369 tmRNA Unknown tmRNA Database Pedi.pent._CP000422_1-369 369 TMR_00423 Pelo.carb._CP000142_1-358 tmRNA Unknown tmRNA Database Pelo.carb._CP000142_1-358 358

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)