RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00403 Noca.aste._TRW-1824-2_1-374 tmRNA Unknown tmRNA Database Noca.aste._TRW-1824-2_1-374 374 TMR_00404 Noca.farc._AP006618_1-368 tmRNA Unknown tmRNA Database Noca.farc._AP006618_1-368 368 TMR_00405 Nost.punc._TRW-63737_1-390 tmRNA Unknown tmRNA Database Nost.punc._TRW-63737_1-390 390 TMR_00406 Nost.spec._BA000019_1-390 tmRNA Unknown tmRNA Database Nost.spec._BA000019_1-390 390 TMR_00407 Novo.arom._CP000248_1-305 tmRNA Unknown tmRNA Database Novo.arom._CP000248_1-305 305 TMR_00408 Ocea.ihey._BA000028_1-364 tmRNA Unknown tmRNA Database Ocea.ihey._BA000028_1-364 364 TMR_00409 Odon.sine._TRW-2839_1-371 tmRNA Unknown tmRNA Database Odon.sine._TRW-2839_1-371 371 TMR_00410 Odon.sine._Z67753_1-368 tmRNA Unknown tmRNA Database Odon.sine._Z67753_1-368 368 TMR_00411 Oeno.oeni._TRW-203123_1-350 tmRNA Unknown tmRNA Database Oeno.oeni._TRW-203123_1-350 350 TMR_00412 Onio.yell._AP006628_1-423 tmRNA Unknown tmRNA Database Onio.yell._AP006628_1-423 423

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)