RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00393 Neph.oliv._AF137379-1_1-327 tmRNA Unknown tmRNA Database Neph.oliv._AF137379-1_1-327 327 TMR_00394 Neph.oliv._AF137379-2_1-327 tmRNA Unknown tmRNA Database Neph.oliv._AF137379-2_1-327 327 TMR_00395 Nitr.euro._BX321865_1-360 tmRNA Unknown tmRNA Database Nitr.euro._BX321865_1-360 360 TMR_00396 Nitr.euro._TRW-915_1-363 tmRNA Unknown tmRNA Database Nitr.euro._TRW-915_1-363 362 TMR_00397 Nitr.hamb._CP000319_1-314 tmRNA Unknown tmRNA Database Nitr.hamb._CP000319_1-314 314 TMR_00398 Nitr.mult._CP000103_1-362 tmRNA Unknown tmRNA Database Nitr.mult._CP000103_1-362 362 TMR_00399 Nitr.ocea._CP000127_1-361 tmRNA Unknown tmRNA Database Nitr.ocea._CP000127_1-361 361 TMR_00400 Nitr.spec._TRW-314253_1-314 tmRNA Unknown tmRNA Database Nitr.spec._TRW-314253_1-314 314 TMR_00401 Nitr.wino._CP000115_1-314 tmRNA Unknown tmRNA Database Nitr.wino._CP000115_1-314 314 TMR_00402 Noca.aste._TRW-1824-1_1-373 tmRNA Unknown tmRNA Database Noca.aste._TRW-1824-1_1-373 373

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)