RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00373 Myco.myco._BX842642_1-411 tmRNA Unknown tmRNA Database Myco.myco._BX842642_1-411 411 TMR_00374 Myco.pene._BA000026_1-405 tmRNA Unknown tmRNA Database Myco.pene._BA000026_1-405 405 TMR_00375 Myco.pneu._AE000035_1-384 tmRNA Unknown tmRNA Database Myco.pneu._AE000035_1-384 384 TMR_00376 Myco.pulm._AL445565_1-387 tmRNA Unknown tmRNA Database Myco.pulm._AL445565_1-387 387 TMR_00377 Myco.scro._TRW-1783_1-368 tmRNA Unknown tmRNA Database Myco.scro._TRW-1783_1-368 368 TMR_00378 Myco.smeg._CP000480_1-369 tmRNA Unknown tmRNA Database Myco.smeg._CP000480_1-369 369 TMR_00379 Myco.szul._TRW-1787_1-368 tmRNA Unknown tmRNA Database Myco.szul._TRW-1787_1-368 368 TMR_00380 Myco.tube._TRW-164513_1-368 tmRNA Unknown tmRNA Database Myco.tube._TRW-164513_1-368 368 TMR_00381 Myco.tube._TRW-1773_1-368 tmRNA Unknown tmRNA Database Myco.tube._TRW-1773_1-368 368 TMR_00382 Myco.xeno._TRW-1789_1-369 tmRNA Unknown tmRNA Database Myco.xeno._TRW-1789_1-369 369

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)