RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00343 Meth.flag._CP000284_1-361 tmRNA Unknown tmRNA Database Meth.flag._CP000284_1-361 361 TMR_00344 Meth.glyc._TRW-406_1-364 tmRNA Unknown tmRNA Database Meth.glyc._TRW-406_1-364 364 TMR_00345 Moor.ther._CP000232_1-358 tmRNA Unknown tmRNA Database Moor.ther._CP000232_1-358 358 TMR_00346 Mora.cata._AX067460_1-359 tmRNA Unknown tmRNA Database Mora.cata._AX067460_1-359 359 TMR_00347 Myco.afri._TRW-33894_1-368 tmRNA Unknown tmRNA Database Myco.afri._TRW-33894_1-368 368 TMR_00348 Myco.arth._TRW-243272_1-394 tmRNA Unknown tmRNA Database Myco.arth._TRW-243272_1-394 394 TMR_00349 Myco.aviu._AE016958_1-368 tmRNA Unknown tmRNA Database Myco.aviu._AE016958_1-368 368 TMR_00350 Myco.aviu._TRW-243243_1-368 tmRNA Unknown tmRNA Database Myco.aviu._TRW-243243_1-368 368 TMR_00351 Myco.bovi._TRW-1765_1-368 tmRNA Unknown tmRNA Database Myco.bovi._TRW-1765_1-368 368 TMR_00352 Myco.Bxz1._AY129337_1-437 tmRNA Unknown tmRNA Database Myco.Bxz1._AY129337_1-437 437

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)