RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00333 Mann.succ._AE016827_1-367 tmRNA Unknown tmRNA Database Mann.succ._AE016827_1-367 367 TMR_00334 Mari.aqua._TRW-351348_1-366 tmRNA Unknown tmRNA Database Mari.aqua._TRW-351348_1-366 366 TMR_00335 Mari.hydr._U68077_1-367 tmRNA Unknown tmRNA Database Mari.hydr._U68077_1-367 367 TMR_00336 Mast.papi._AF550352_1-333 tmRNA Unknown tmRNA Database Mast.papi._AF550352_1-333 333 TMR_00337 Meso.flor._AE017263_1-408 tmRNA Unknown tmRNA Database Meso.flor._AE017263_1-408 408 TMR_00338 Meso.loti._TRW-266835_1-314 tmRNA Unknown tmRNA Database Meso.loti._TRW-266835_1-314 314 TMR_00339 Meso.spec._TRW-266779_1-316 tmRNA Unknown tmRNA Database Meso.spec._TRW-266779_1-316 316 TMR_00340 Meso.viri._AF166114_1-359 tmRNA Unknown tmRNA Database Meso.viri._AF166114_1-359 359 TMR_00341 Meth.caps._AE017282_1-356 tmRNA Unknown tmRNA Database Meth.caps._AE017282_1-356 356 TMR_00342 Meth.exto._TRW-408_1-317 tmRNA Unknown tmRNA Database Meth.exto._TRW-408_1-317 317

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)