RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00303 Lept.bory._TRW-1184_1-391 tmRNA Unknown tmRNA Database Lept.bory._TRW-1184_1-391 391 TMR_00304 Lept.ferr._TRW-180_1-364 tmRNA Unknown tmRNA Database Lept.ferr._TRW-180_1-364 364 TMR_00305 Lept.inte._AE016823_1-350 tmRNA Unknown tmRNA Database Lept.inte._AE016823_1-350 350 TMR_00306 Lept.spec._TRW-261385_1-359 tmRNA Unknown tmRNA Database Lept.spec._TRW-261385_1-359 359 TMR_00307 Lept.spec._TRW-261386_1-359 tmRNA Unknown tmRNA Database Lept.spec._TRW-261386_1-359 359 TMR_00308 Leuc.lact._AF375569_1-358 tmRNA Unknown tmRNA Database Leuc.lact._AF375569_1-358 358 TMR_00309 Leuc.mese._AF375574_1-307 tmRNA Unknown tmRNA Database Leuc.mese._AF375574_1-307 307 TMR_00310 Leuc.mese._CP000414_1-358 tmRNA Unknown tmRNA Database Leuc.mese._CP000414_1-358 358 TMR_00311 Leuc.mese._TRW-1245_1-358 tmRNA Unknown tmRNA Database Leuc.mese._TRW-1245_1-358 358 TMR_00312 Leuc.pseu._AF375570_1-357 tmRNA Unknown tmRNA Database Leuc.pseu._AF375570_1-357 357

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)