RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00293 Lact.lact._AF375554_1-359 tmRNA Unknown tmRNA Database Lact.lact._AF375554_1-359 359 TMR_00294 Lact.plan._AF375567_1-353 tmRNA Unknown tmRNA Database Lact.plan._AF375567_1-353 353 TMR_00295 Lact.plan._AF375576_1-371 tmRNA Unknown tmRNA Database Lact.plan._AF375576_1-371 371 TMR_00296 Lact.plan._AL935259_1-372 tmRNA Unknown tmRNA Database Lact.plan._AL935259_1-372 372 TMR_00297 Lact.raff._AF375578_1-353 tmRNA Unknown tmRNA Database Lact.raff._AF375578_1-353 353 TMR_00298 Lact.sake._AF400065_1-370 tmRNA Unknown tmRNA Database Lact.sake._AF400065_1-370 370 TMR_00299 Lact.sake._TRW-314315_1-370 tmRNA Unknown tmRNA Database Lact.sake._TRW-314315_1-370 370 TMR_00300 Laws.intr._AM180252_1-376 tmRNA Unknown tmRNA Database Laws.intr._AM180252_1-376 376 TMR_00301 Legi.pneu._CR628337_1-406 tmRNA Unknown tmRNA Database Legi.pneu._CR628337_1-406 406 TMR_00302 Leif.xyli._AE016822_1-394 tmRNA Unknown tmRNA Database Leif.xyli._AE016822_1-394 394

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)