RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00271 Idio.loih._AE017340_1-359 tmRNA Unknown tmRNA Database Idio.loih._AE017340_1-359 359 TMR_00273 Jann.spec._TRW-290400_1-317 tmRNA Unknown tmRNA Database Jann.spec._TRW-290400_1-317 317 TMR_00274 Kine.radi._TRW-266940_1-366 tmRNA Unknown tmRNA Database Kine.radi._TRW-266940_1-366 366 TMR_00275 Kleb.aero._AX048500_1-365 tmRNA Unknown tmRNA Database Kleb.aero._AX048500_1-365 365 TMR_00276 Kleb.pneu._TRW-272620_1-363 tmRNA Unknown tmRNA Database Kleb.pneu._TRW-272620_1-363 363 TMR_00278 Lact.acid._CP000033_1-369 tmRNA Unknown tmRNA Database Lact.acid._CP000033_1-369 369 TMR_00279 Lact.brev._CP000416_1-372 tmRNA Unknown tmRNA Database Lact.brev._CP000416_1-372 372 TMR_00280 Lact.case._CP000423_1-364 tmRNA Unknown tmRNA Database Lact.case._CP000423_1-364 364 TMR_00281 Lact.delb._AF440335_1-316 tmRNA Unknown tmRNA Database Lact.delb._AF440335_1-316 316 TMR_00282 Lact.delb._TRW-1584_1-368 tmRNA Unknown tmRNA Database Lact.delb._TRW-1584_1-368 368

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)