RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00230 Fran.tula._AM286280_1-421 tmRNA Unknown tmRNA Database Fran.tula._AM286280_1-421 421 TMR_00231 Fran.tula._CP000437_1-421 tmRNA Unknown tmRNA Database Fran.tula._CP000437_1-421 421 TMR_00232 Fran.tula._CP000439_1-421 tmRNA Unknown tmRNA Database Fran.tula._CP000439_1-421 421 TMR_00233 Frem.dipl._AY082653_1-389 tmRNA Unknown tmRNA Database Frem.dipl._AY082653_1-389 389 TMR_00234 Fuso.nucl._AE009951_1-344 tmRNA Unknown tmRNA Database Fuso.nucl._AE009951_1-344 344 TMR_00235 Fuso.nucl._AE010567_1-341 tmRNA Unknown tmRNA Database Fuso.nucl._AE010567_1-341 341 TMR_00236 Fuso.nucl._TRW-209882_1-344 tmRNA Unknown tmRNA Database Fuso.nucl._TRW-209882_1-344 344 TMR_00237 Fuso.nucl._TRW-393480_1-344 tmRNA Unknown tmRNA Database Fuso.nucl._TRW-393480_1-344 344 TMR_00238 Gemm.obsc._TRW-214688_1-412 tmRNA Unknown tmRNA Database Gemm.obsc._TRW-214688_1-412 412 TMR_00239 Geob.kaus._BA000043_1-352 tmRNA Unknown tmRNA Database Geob.kaus._BA000043_1-352 352

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)