RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00170 Ehrl.chaf._CP000236_1-314 tmRNA Unknown tmRNA Database Ehrl.chaf._CP000236_1-314 314 TMR_00171 Ehrl.rumi._TRW-254945-1_1-310 tmRNA Unknown tmRNA Database Ehrl.rumi._TRW-254945-1_1-310 310 TMR_00172 Ehrl.rumi._TRW-254945-2_1-310 tmRNA Unknown tmRNA Database Ehrl.rumi._TRW-254945-2_1-310 310 TMR_00173 Emil.huxl._AY741371_1-291 tmRNA Unknown tmRNA Database Emil.huxl._AY741371_1-291 291 TMR_00174 Emil.huxl._TRW-280463_1-291 tmRNA Unknown tmRNA Database Emil.huxl._TRW-280463_1-291 291 TMR_00175 Ente.aero._AY491435_1-363 tmRNA Unknown tmRNA Database Ente.aero._AY491435_1-363 363 TMR_00176 Ente.cloa._AY491434_1-364 tmRNA Unknown tmRNA Database Ente.cloa._AY491434_1-364 364 TMR_00177 Ente.dura._AF375582_1-368 tmRNA Unknown tmRNA Database Ente.dura._AF375582_1-368 368 TMR_00178 Ente.faec._AF375580_1-367 tmRNA Unknown tmRNA Database Ente.faec._AF375580_1-367 367 TMR_00179 Ente.faec._BD193796_1-367 tmRNA Unknown tmRNA Database Ente.faec._BD193796_1-367 367

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)