RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00150 Cyan.para._TRW-2762_1-294 tmRNA Unknown tmRNA Database Cyan.para._TRW-2762_1-294 294 TMR_00151 Cyan.para._U30821_1-291 tmRNA Unknown tmRNA Database Cyan.para._U30821_1-291 291 TMR_00152 Cyto.hutc._CP000383_1-404 tmRNA Unknown tmRNA Database Cyto.hutc._CP000383_1-404 404 TMR_00153 Dech.agit._TRW-73030_1-423 tmRNA Unknown tmRNA Database Dech.agit._TRW-73030_1-423 423 TMR_00154 Dech.arom._TRW-159087_1-424 tmRNA Unknown tmRNA Database Dech.arom._TRW-159087_1-424 424 TMR_00155 Deha.ethe._CP000027_1-352 tmRNA Unknown tmRNA Database Deha.ethe._CP000027_1-352 352 TMR_00156 Dein.geot._CP000359_1-348 tmRNA Unknown tmRNA Database Dein.geot._CP000359_1-348 348 TMR_00157 Dein.radi._AE001939_1-346 tmRNA Unknown tmRNA Database Dein.radi._AE001939_1-346 346 TMR_00158 Dein.radi._TRW-243230_1-349 tmRNA Unknown tmRNA Database Dein.radi._TRW-243230_1-349 349 TMR_00159 Desu.acet._TRW-281689_1-353 tmRNA Unknown tmRNA Database Desu.acet._TRW-281689_1-353 353

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)