RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00068 Bord.bron._TRW-257310_1-387 tmRNA Unknown tmRNA Database Bord.bron._TRW-257310_1-387 387 TMR_00069 Bord.para._TRW-257311_1-387 tmRNA Unknown tmRNA Database Bord.para._TRW-257311_1-387 387 TMR_00070 Bord.pert._TRW-257313_1-387 tmRNA Unknown tmRNA Database Bord.pert._TRW-257313_1-387 387 TMR_00071 Borr.burg._AE001118_1-359 tmRNA Unknown tmRNA Database Borr.burg._AE001118_1-359 359 TMR_00072 Borr.burg._TRW-224326_1-362 tmRNA Unknown tmRNA Database Borr.burg._TRW-224326_1-362 362 TMR_00073 Borr.gari._CP000013_1-363 tmRNA Unknown tmRNA Database Borr.gari._CP000013_1-363 363 TMR_00074 Brad.japo._BA000040_1-315 tmRNA Unknown tmRNA Database Brad.japo._BA000040_1-315 315 TMR_00075 Brad.japo._M73823_1-315 tmRNA Unknown tmRNA Database Brad.japo._M73823_1-315 315 TMR_00076 Brev.line._TRW-321955_1-377 tmRNA Unknown tmRNA Database Brev.line._TRW-321955_1-377 377 TMR_00077 Bruc.abor._AE017223_1-320 tmRNA Unknown tmRNA Database Bruc.abor._AE017223_1-320 320

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)