RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00038 Azoa.spec._TRW-62928_1-378 tmRNA Unknown tmRNA Database Azoa.spec._TRW-62928_1-378 378 TMR_00039 Azoa.spec._TRW-76114_1-421 tmRNA Unknown tmRNA Database Azoa.spec._TRW-76114_1-421 421 TMR_00040 Azos.oryz._TRW-146939_1-356 tmRNA Unknown tmRNA Database Azos.oryz._TRW-146939_1-356 356 TMR_00041 Azot.vine._TRW-354_1-352 tmRNA Unknown tmRNA Database Azot.vine._TRW-354_1-352 352 TMR_00042 Baci.anth._AE016879_1-355 tmRNA Unknown tmRNA Database Baci.anth._AE016879_1-355 355 TMR_00043 Baci.cere._AE017194_1-355 tmRNA Unknown tmRNA Database Baci.cere._AE017194_1-355 355 TMR_00044 Baci.cere._TRW-226900_1-355 tmRNA Unknown tmRNA Database Baci.cere._TRW-226900_1-355 355 TMR_00045 Baci.cere._TRW-288681_1-355 tmRNA Unknown tmRNA Database Baci.cere._TRW-288681_1-355 355 TMR_00046 Baci.clau._AP006627_1-355 tmRNA Unknown tmRNA Database Baci.clau._AP006627_1-355 355 TMR_00047 Baci.G._TRW-12333_1-312 tmRNA Unknown tmRNA Database Baci.G._TRW-12333_1-312 312

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)