RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00028 Alka.meta._TRW-293826_1-355 tmRNA Unknown tmRNA Database Alka.meta._TRW-293826_1-355 355 TMR_00029 Amph.coff._AF550350_1-331 tmRNA Unknown tmRNA Database Amph.coff._AF550350_1-331 331 TMR_00030 Anab.vari._CP000117_1-390 tmRNA Unknown tmRNA Database Anab.vari._CP000117_1-390 390 TMR_00031 Anap.marg._CP000030_1-308 tmRNA Unknown tmRNA Database Anap.marg._CP000030_1-308 308 TMR_00032 Anap.phag._CP000235_1-308 tmRNA Unknown tmRNA Database Anap.phag._CP000235_1-308 308 TMR_00033 Aqui.aeol._AE000749_1-344 tmRNA Unknown tmRNA Database Aqui.aeol._AE000749_1-344 344 TMR_00034 Aqui.aeol._TRW-63363_1-347 tmRNA Unknown tmRNA Database Aqui.aeol._TRW-63363_1-347 347 TMR_00035 Arth.spec._CP000454_1-369 tmRNA Unknown tmRNA Database Arth.spec._CP000454_1-369 369 TMR_00036 Aste.yell._CP000061_1-426 tmRNA Unknown tmRNA Database Aste.yell._CP000061_1-426 426 TMR_00037 Aste.yell._TRW-322098_1-426 tmRNA Unknown tmRNA Database Aste.yell._TRW-322098_1-426 426

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)