RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00007 Acid.caps._TRW-240015_1-352 tmRNA Unknown tmRNA Database Acid.caps._TRW-240015_1-352 352 TMR_00008 Acid.ferr._TRW-133824_1-364 tmRNA Unknown tmRNA Database Acid.ferr._TRW-133824_1-364 364 TMR_00009 Acid.ferr._TRW-243159_1-364 tmRNA Unknown tmRNA Database Acid.ferr._TRW-243159_1-364 364 TMR_00010 Acid.ferr._TRW-920_1-341 tmRNA Unknown tmRNA Database Acid.ferr._TRW-920_1-341 341 TMR_00012 Acin.spec._CR543861_1-360 tmRNA Unknown tmRNA Database Acin.spec._CR543861_1-360 360 TMR_00013 Acti.acti._TRW-272556_1-366 tmRNA Unknown tmRNA Database Acti.acti._TRW-272556_1-366 366 TMR_00014 Acti.naes._TRW-240017_1-371 tmRNA Unknown tmRNA Database Acti.naes._TRW-240017_1-371 371 TMR_00015 Acti.pleu._TRW-228399_1-366 tmRNA Unknown tmRNA Database Acti.pleu._TRW-228399_1-366 366 TMR_00016 Acti.pleu._TRW-44294_1-366 tmRNA Unknown tmRNA Database Acti.pleu._TRW-44294_1-366 366 TMR_00017 Acti.succ._TRW-339671_1-367 tmRNA Unknown tmRNA Database Acti.succ._TRW-339671_1-367 367

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)