RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] RFA_00635 Hepatitis delta virus ribozyme, RF00094, M28267.1/687-775 HDV Ribozyme Hepatitis delta virus Rfam Database RF00094 M28267.1/775-687 89 RFA_00636 Hepatitis delta virus ribozyme, RF00094, M84917.1/684-773 HDV Ribozyme Hepatitis delta virus Rfam Database RF00094 M84917.1/773-684 90 RFA_00637 Hepatitis delta virus ribozyme, RF00094, M92448.1/681-769 HDV Ribozyme Hepatitis delta virus Rfam Database RF00094 M92448.1/769-681 89 RFA_00638 Hepatitis delta virus ribozyme, RF00094, U81988.1/679-767 HDV Ribozyme Hepatitis delta virus Rfam Database RF00094 U81988.1/767-679 89 RFA_00767 Coronavirus 3 prime UTR pseudoknot, RF00165, AF058944.1/9309-9370 Other RNA Unknown Rfam Database RF00165 AF058944.1/9370-9309 62 RFA_00768 Coronavirus 3 prime UTR pseudoknot, RF00165, AF207902.1/31022-31083 Other RNA Unknown Rfam Database RF00165 AF207902.1/31083-31022 62 RFA_00769 Coronavirus 3 prime UTR pseudoknot, RF00165, AF353511.1/27820-27882 Other RNA Unknown Rfam Database RF00165 AF353511.1/27882-27820 63 RFA_00770 Coronavirus 3 prime UTR pseudoknot, RF00165, D13096.1/9359-9422 Other RNA Unknown Rfam Database RF00165 D13096.1/9422-9359 64 RFA_00771 Coronavirus 3 prime UTR pseudoknot, RF00165, M36656.1/1479-1540 Other RNA Unknown Rfam Database RF00165 M36656.1/1540-1479 62 RFA_00772 Coronavirus 3 prime UTR pseudoknot, RF00165, X00509.1/2201-2262 Other RNA Unknown Rfam Database RF00165 X00509.1/2262-2201 62

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)