RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01309 5'-R(*CP*AP*CP*CP*GP*GP*AP*UP*GP*GP*UP*(BRO) UP*CP*GP*GP*UP*G)-3' Other RNA Unknown RCSB Protein Data Bank 406D 136 RFA_00597 Vertebrate telomerase RNA, RF00024, AF221910.1/112-554 Vert. Telo. RNA Unknown Rfam Database RF00024 AF221910.1/554-112 443 RFA_00598 Vertebrate telomerase RNA, RF00024, AF221913.1/109-520 Vert. Telo. RNA Unknown Rfam Database RF00024 AF221913.1/520-109 412 RFA_00599 Vertebrate telomerase RNA, RF00024, AF221921.1/98-548 Vert. Telo. RNA Unknown Rfam Database RF00024 AF221921.1/548-98 451 RFA_00600 Vertebrate telomerase RNA, RF00024, AF221935.1/112-602 Vert. Telo. RNA Unknown Rfam Database RF00024 AF221935.1/602-112 491 RFA_00601 Vertebrate telomerase RNA, RF00024, AF221939.1/99-544 Vert. Telo. RNA Unknown Rfam Database RF00024 AF221939.1/544-99 446 RFA_00602 Vertebrate telomerase RNA, RF00024, U85256.1/1-451 Vert. Telo. RNA Unknown Rfam Database RF00024 U85256.1/451-1 451 RFA_00632 Hepatitis delta virus ribozyme, RF00094, AB037947.1/685-775 HDV Ribozyme Hepatitis delta virus Rfam Database RF00094 AB037947.1/775-685 91 RFA_00633 Hepatitis delta virus ribozyme, RF00094, AB037948.1/685-775 HDV Ribozyme Hepatitis delta virus Rfam Database RF00094 AB037948.1/775-685 91 RFA_00634 Hepatitis delta virus ribozyme, RF00094, L22063.1/691-781 HDV Ribozyme Hepatitis delta virus Rfam Database RF00094 L22063.1/781-691 91

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)