RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01203 SOLUTION STRUCTURE OF AN RRNA SUBSTRATE BOUND TO THE PSEUDOURIDYLATION POCKET OF A BOX H/ACA SNORNA Other rRNA Unknown RCSB Protein Data Bank 2PCW 49 PDB_01206 NMR STRUCTURE OF A KISSING COMPLEX FORMED BETWEEN THE TAR RNA ELEMENT OF HIV-1 AND A LNA MODIFIED AP Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2PN9 32 PDB_01220 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH NEOMYCIN. THIS FIL 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2QAL 1530 PDB_01221 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH NEOMYCIN. THIS FIL 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2QAM 2958 PDB_01222 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH NEOMYCIN. THIS FIL 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2QAN 1530 PDB_01223 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH NEOMYCIN. THIS FIL 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2QAO 2958 PDB_01224 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN. THIS F 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2QB9 1530 PDB_01225 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN. THIS F 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2QBA 2958 PDB_01226 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN. THIS F 16S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2QBB 1530 PDB_01227 CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH GENTAMICIN. THIS F 23S rRNA ESCHERICHIA COLI RCSB Protein Data Bank 2QBC 2958

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)