RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01182 THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE 23S rRNA DEINOCOCCUS RADIODURANS RCSB Protein Data Bank 2OGM 2766 PDB_01183 THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE 23S rRNA DEINOCOCCUS RADIODURANS RCSB Protein Data Bank 2OGN 2766 PDB_01184 THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE 23S rRNA DEINOCOCCUS RADIODURANS RCSB Protein Data Bank 2OGO 2765 PDB_01185 HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR WITH C75U MUTATION AND BOUND TO MONOVALENT CATION T Other Ribozyme HOMO SAPIENS RCSB Protein Data Bank 2OIH 73 PDB_01190 HEPATITIS DELTA VIRUS RIBOZYME PRECURSOR STRUCTURE, WITH C75U MUTATION, BOUND TO TL+ AND COBALT HEXA Other Ribozyme HOMO SAPIENS RCSB Protein Data Bank 2OJ3 73 PDB_01194 NMR STRUCTURE OF A KISSING COMPLEX FORMED BETWEEN THE TAR RNA ELEMENT OF HIV-1 AND A LNA/RNA APTAMER Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2OOM 32 PDB_01195 13-DEOXYTEDANOLIDE BOUND TO THE LARGE SUBUNIT OF HALOARCULA MARISMORTUI 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 2OTJ 2875 PDB_01196 GIRODAZOLE BOUND TO THE LARGE SUBUNIT OF HALOARCULA MARISMORTUI 23S rRNA HALOARCULA MARISMORTUI RCSB Protein Data Bank 2OTL 2875 PDB_01198 CRYSTAL STRUCTURE OF A 70S RIBOSOME-TRNA COMPLEX REVEALS FUNCTIONAL INTERACTIONS AND REARRANGEMENTS. 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2OW8 1660 PDB_01201 SOLUTION STRUCTURE OF THE 3' PSEUDOURIDYATION POCKET OF U65 SNORNA WITH BOUND SUBSTRATE Other rRNA Unknown RCSB Protein Data Bank 2P89 48

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)