RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_01020 GUANINE RIBOSWITCH A21U, U75A MUTANT BOUND TO HYPOXANTHINE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2EES 68 PDB_01021 GUANINE RIBOSWITCH A21G, U75C MUTANT BOUND TO HYPOXANTHINE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2EET 68 PDB_01022 GUANINE RIBOSWITCH U22A, A52U MUTANT BOUND TO HYPOXANTHINE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2EEU 68 PDB_01023 GUANINE RIBOSWITCH U22C, A52G MUTANT BOUND TO HYPOXANTHINE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2EEV 68 PDB_01024 GUANINE RIBOSWITCH U47C MUTANT BOUND TO HYPOXANTHINE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2EEW 68 PDB_01039 30S RIBOSOME + DESIGNER ANTIBIOTIC 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 2F4V 1511 PDB_01040 NMR SOLUTION OF HIV-1 LAI KISSING COMPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2F4X 48 PDB_01046 HIV-1 DIS KISSING-LOOP IN COMPLEX WITH NEAMINE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FCX 46 PDB_01047 HIV-1 DIS KISSING-LOOP IN COMPLEX WITH NEOMYCIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FCY 46 PDB_01048 HIV-1 DIS KISSING-LOOP IN COMPLEX WITH RIBOSTAMYCIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2FCZ 92

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)