RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00805 STRUCTURE OF THE TETRAHYMENA RIBOZYME: BASE TRIPLE SANDWICH AND METAL ION AT THE ACTIVE SITE Other Ribozyme TETRAHYMENA THERMOPHILA RCSB Protein Data Bank 1X8W 968 PDB_00808 INHIBITION OF PEPTIDE BOND FORMATION BY PLEUROMUTILINS: THE STRUCTURE OF THE 50S RIBOSOMAL SUBUNIT F 23S rRNA DEINOCOCCUS RADIODURANS RCSB Protein Data Bank 1XBP 2884 PDB_00811 CRYSTAL STRUCTURE OF MNM5U34T6A37-TRNALYSUUU COMPLEXED WITH AAG-MRNA IN THE DECODING CENTER 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1XMO 1521 PDB_00812 CRYSTAL STRUCTURE OF T6A37-ASLLYSUUU AAA-MRNA BOUND TO THE DECODING CENTER 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1XMQ 1522 PDB_00813 STRUCTURE OF AN INOSINE-ADENINE WOBBLE BASE PAIR COMPLEX IN THE CONTEXT OF THE DECODING CENTER 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1XNQ 1522 PDB_00814 CRYSTAL STRUCTURE OF AN INOSINE-CYTOSINE WOBBLE BASE PAIR IN THE CONTEXT OF THE DECODING CENTER 16S rRNA THERMUS THERMOPHILUS RCSB Protein Data Bank 1XNR 1522 PDB_00816 HIV-1 SUBTYPE F GENOMIC RNA DIMERIZATION INITIATION SITE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1XP7 46 PDB_00817 HIV-1 SUBTYPE B GENOMIC RNA DIMERIZATION INITIATION SITE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1XPE 46 PDB_00818 HIV-1 SUBTYPE A GENOMIC RNA DIMERIZATION INITIATION SITE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1XPF 46 PDB_00827 CRYSTAL STRUCTURE OF AN ACTIVE GROUP I RIBOZYME-PRODUCT COMPLEX Other Ribozyme BACTERIOPHAGE TWORT RCSB Protein Data Bank 1Y0Q 233

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)